epistochmodels 0.3.4

EpiStochModels

Continuous time stochastic epidemic models implemented in D. Python wrapper has been removed because PyD is no longer maintained.

So now models must be written in D like exemplified in app.d and on CTMC_example.d.

D models writen followind the second example above, can be run like this:

dub run --build=release --single my_model.d

Check the documentation for detailed instructions on how to install and use. You can also have a look at the example notebooks here.

Development

In order to work on EpiStochModels you need to have DMD or LDC dlang compilers installed. The you can activate the dlang environment in your shell:

source ~/dlang/ldc-1.27.1/activate.fish

the line above, is for fish shell, if you use bash, do this (to use the DMD compiler)

source ~/dlang/dmd-2.097.2/activate 

to deactivate the virtual environment run deactivate after you are done.

To test the package:

dub test