mir 0.16.0-alpha5

Mir

Generic Numerical Library for Science and Machine Learning.

Contents

• mir.ndslice Multidimensional Random Access Ranges and Arrays
• mir.sparse Sparse Tensors
• Sparse - DOK format
• Different ranges for COO format
• CompressedTensor - CSR/CSC formats
• mir.sparse.blas - Sparse BLAS for CompressedTensor
• mir.model.lda.hoffman - Online variational Bayes for latent Dirichlet allocation (Online VB LDA) for sparse documents. LDA is used for topic modeling.
• mir.combinatorics Combinations, combinations with repeats, cartesian power, permutations.
• mir.las.sum Functions and Output Ranges for Summation Algorithms. Works with user-defined types.
• Precise algorithm: improved analog of Python's fsum
• Pairwise algorithm: fast version for Input Ranges
• Kahan, KBN, and KB2 algorithms
• mir.blas - this is slow snail, it is for experiments with BLAS API. Don't use for now.

In progress

• mir.random - non-uniform RNGs.
• mir.blas - BLAS in D.

Documentation

Alpha version of API is available here.

Compatibility

	Linux	Mac OS X	Windows
DMD 64
DMD 32		OS X >= 10.7 is x86-64 only
LDC 64			by ignoring issue #120
LDC 32		OS X >= 10.7 is x86-64 only	by ignoring issue #120

• DMD (reference D compiler) >= 2.070
• LDC (LLVM D Compiler) >= 1.0.0.

Installation

Fast setup with the dub package manager

Dub is the D's package manager. You can create a new project with:

dub init --format=json <project-name>

Now you need to edit the dub.json add mir as dependency and set its targetType to executable.

{
	...
	"dependencies": {
		"mir": "~><current-version>"
	},
	"targetType": "executable"
}

Now you can create a main file in the source and run your code with:

dub

You can use a different compile with dub --compiler ldc. For a performance boost, add -b release to let the compiler perform additional optimizations, inlining, removal of bound checking and assert statements.

Rapid edit-run cycle without dub

The easiest way to execute your code is with rdmd.

rdmd -Isource examples/means_of_columns.d

rdmd is a companion to the dmd compiler that simplifies the typical edit-compile-link-run or edit-make-run cycle to a rapid edit-run cycle. Like make and other tools, rdmd uses the relative dates of the files involved to minimize the amount of work necessary. Unlike make, rdmd tracks dependencies and freshness without requiring additional information from the user. You can find more information here.

Compile with ldc

The easiest way is to specify mir's sources during compilation:

ldc -Isource examples/means_of_columns.d

If you copy mir's sources to /usr/include/dlang/ldc/mir you don't even need the -Isource include. You might want to have a look at dynamic linking with dmd below - it works with ldc too.

For an additional performance boost, you can pass -release -inline to ldc.

Compile with dmd

Warning: Manually using dmd is a bit more complicated and if you are new to DLang, we advise you to use either rdmd, dub or ldc.

Step 1: Compile your file(s)

dmd -c -Isource examples/means_of_columns.d

If you do this more often, you probably want to install a Mir package or put the mir sources to /usr/include/dlang/dmd.

Now you can either use static linking (will copy everything into the binary) or dynamic linking (will load binary on run) to create an executable.

Step 2a: Static linking

Static linking will result in copying all library routines in your binary. While this might require more disk space, it is faster and more portable. The only downside is that it requires recompilation if mir is updated.

2.a.1: Create static mir library

You need to create a static library of mir once:

dmd -lib -oflibmir.a $(find source -name '*.d')

If you have dub available, you can also use dub -c static-lib.

2.a.2: Link statically

dmd means_of_columns.o libmir.a

Step 2b: Dynamic linking

With dynamic linking the OS will bind the binary and it's required external shared libraries at runtime.

2.b.1: Create shared mir library

You need to create a shared, dynamic library of mir once:

dmd -shared -oflibmir.so -defaultlib=libphobos2.so -fPIC $(find source -name '*.d')

We need to specify:

• -defaultlib=libphobos2.so as Phobos is statically linked by default.
• fPIC to create Position Independent Code (it creates a global offset table)

If you have dub available, you can also use dub -c dynamic-lib.

2.b.2: Link dynamically

dmd means_of_columns.o -Llibmir.so -L-rpath=.

You can inspect the dynamic linking with ldd means_of_columns.

Packages

Putting mir in /usr/include/dlang/dmd, avoids the need for -Isource. So you can execute your code with rdmd <your-file.d>

Arch Linux

Type	Name	Version
Stable	libmir
Latest	libmir-git

Contributing

See our TODO List. Mir is very young and we are open for contributing to source code, documentation, examples and benchmarks.

Notes

• mir.ndslice is a development version of the std.experimental.ndslice package.